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Rhizobium tarimense sp. nov., isolated from soil in the ancient Khiyik River.

Identifieur interne : 002502 ( Main/Exploration ); précédent : 002501; suivant : 002503

Rhizobium tarimense sp. nov., isolated from soil in the ancient Khiyik River.

Auteurs : Maripat Turdahon [République populaire de Chine] ; Ghenijan Osman [République populaire de Chine] ; Maryam Hamdun [République populaire de Chine] ; Khayir Yusuf [République populaire de Chine] ; Zumret Abdurehim [République populaire de Chine] ; Gulsumay Abaydulla [République populaire de Chine] ; Muhtar Abdukerim [République populaire de Chine] ; Chengxiang Fang [République populaire de Chine] ; Erkin Rahman [République populaire de Chine]

Source :

RBID : pubmed:23203621

Descripteurs français

English descriptors

Abstract

A Gram-negative, non-motile, pale-yellow, rod-shaped bacterial strain, PL-41(T), was isolated from Populus euphratica forest soil at the ancient Khiyik River valley in Xinjiang Uyghur Autonomous Region, People's Republic of China. Strain PL-41(T) grew optimally at 30 °C and pH 7.0-8.0. The major quinone was Q-10. The predominant cellular fatty acids of strain PL-41(T) were summed feature 8 (comprising C18 : 1ω7c and C18 : 1ω6c), C16 : 0 and C19 : 0 cyclo ω8c. Polar lipids of strain PL-41(T) include two unidentified aminophospholipids (APL1, 2), two unidentified phospholipids (PL1, 2), phosphatidylcholine and three unidentified lipids (L1-3). Strain PL-41(T) showed 16S rRNA gene sequence similarity of 97.0-97.5 % to the type strains of recognized species of the genus Rhizobium. Phylogenetic analysis of strain PL-41(T) based on the sequences of housekeeping genes recA and atpD confirmed (similarities are less than 90 %) its position as a distinct species of the genus Rhizobium. The DNA G+C content was 57.8 mol%. DNA-DNA relatedness between strain PL-41(T) and the type strains of Rhizobium huautlense S02(T), Rhizobium alkalisoli CCBAU 01393(T), Rhizobium vignae CCBAU 05176(T) and Rhizobium loessense CCBAU 7190B(T) were 33.4, 22.6, 25.5 and 45.1 %, respectively, indicating that strain PL-41(T) was distinct from them genetically. Strain PL-41(T) also can be differentiated from these four phylogenetically related species of the genus Rhizobium by various phenotypic properties. On the basis of phenotypic properties, phylogenetic distinctiveness and genetic data, strain PL-41(T) is considered to represent a novel species of the genus Rhizobium, for which the name Rhizobium tarimense sp. nov. is proposed. The type strain is PL-41(T) ( = CCTCC AB 2011011(T) = NRRL B-59556(T)).

DOI: 10.1099/ijs.0.042176-0
PubMed: 23203621


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<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (analysis)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phospholipids (analysis)</term>
<term>Phylogeny (MeSH)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Rhizobium (classification)</term>
<term>Rhizobium (genetics)</term>
<term>Rhizobium (isolation & purification)</term>
<term>Rivers (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Soil Microbiology (MeSH)</term>
<term>Ubiquinone (analogs & derivatives)</term>
<term>Ubiquinone (analysis)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (analyse)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chine (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Microbiologie du sol (MeSH)</term>
<term>Phospholipides (analyse)</term>
<term>Phylogenèse (MeSH)</term>
<term>Rhizobium (classification)</term>
<term>Rhizobium (génétique)</term>
<term>Rhizobium (isolement et purification)</term>
<term>Rivières (MeSH)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Ubiquinones (analogues et dérivés)</term>
<term>Ubiquinones (analyse)</term>
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<term>Ubiquinone</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en">
<term>Fatty Acids</term>
<term>Phospholipids</term>
<term>Ubiquinone</term>
</keywords>
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<term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
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<term>China</term>
</keywords>
<keywords scheme="MESH" qualifier="analogues et dérivés" xml:lang="fr">
<term>Ubiquinones</term>
</keywords>
<keywords scheme="MESH" qualifier="analyse" xml:lang="fr">
<term>Acides gras</term>
<term>Phospholipides</term>
<term>Ubiquinones</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Rhizobium</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>Molecular Sequence Data</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Rivers</term>
<term>Sequence Analysis, DNA</term>
<term>Soil Microbiology</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Analyse de séquence d'ADN</term>
<term>Chine</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Hybridation d'acides nucléiques</term>
<term>Microbiologie du sol</term>
<term>Phylogenèse</term>
<term>Rivières</term>
<term>Techniques de typage bactérien</term>
</keywords>
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<term>République populaire de Chine</term>
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<front>
<div type="abstract" xml:lang="en">A Gram-negative, non-motile, pale-yellow, rod-shaped bacterial strain, PL-41(T), was isolated from Populus euphratica forest soil at the ancient Khiyik River valley in Xinjiang Uyghur Autonomous Region, People's Republic of China. Strain PL-41(T) grew optimally at 30 °C and pH 7.0-8.0. The major quinone was Q-10. The predominant cellular fatty acids of strain PL-41(T) were summed feature 8 (comprising C18 : 1ω7c and C18 : 1ω6c), C16 : 0 and C19 : 0 cyclo ω8c. Polar lipids of strain PL-41(T) include two unidentified aminophospholipids (APL1, 2), two unidentified phospholipids (PL1, 2), phosphatidylcholine and three unidentified lipids (L1-3). Strain PL-41(T) showed 16S rRNA gene sequence similarity of 97.0-97.5 % to the type strains of recognized species of the genus Rhizobium. Phylogenetic analysis of strain PL-41(T) based on the sequences of housekeeping genes recA and atpD confirmed (similarities are less than 90 %) its position as a distinct species of the genus Rhizobium. The DNA G+C content was 57.8 mol%. DNA-DNA relatedness between strain PL-41(T) and the type strains of Rhizobium huautlense S02(T), Rhizobium alkalisoli CCBAU 01393(T), Rhizobium vignae CCBAU 05176(T) and Rhizobium loessense CCBAU 7190B(T) were 33.4, 22.6, 25.5 and 45.1 %, respectively, indicating that strain PL-41(T) was distinct from them genetically. Strain PL-41(T) also can be differentiated from these four phylogenetically related species of the genus Rhizobium by various phenotypic properties. On the basis of phenotypic properties, phylogenetic distinctiveness and genetic data, strain PL-41(T) is considered to represent a novel species of the genus Rhizobium, for which the name Rhizobium tarimense sp. nov. is proposed. The type strain is PL-41(T) ( = CCTCC AB 2011011(T) = NRRL B-59556(T)).</div>
</front>
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<DateCompleted>
<Year>2013</Year>
<Month>10</Month>
<Day>29</Day>
</DateCompleted>
<DateRevised>
<Year>2020</Year>
<Month>05</Month>
<Day>25</Day>
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<ISSN IssnType="Electronic">1466-5034</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>63</Volume>
<Issue>Pt 7</Issue>
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<Year>2013</Year>
<Month>Jul</Month>
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<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
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<ArticleTitle>Rhizobium tarimense sp. nov., isolated from soil in the ancient Khiyik River.</ArticleTitle>
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<Abstract>
<AbstractText>A Gram-negative, non-motile, pale-yellow, rod-shaped bacterial strain, PL-41(T), was isolated from Populus euphratica forest soil at the ancient Khiyik River valley in Xinjiang Uyghur Autonomous Region, People's Republic of China. Strain PL-41(T) grew optimally at 30 °C and pH 7.0-8.0. The major quinone was Q-10. The predominant cellular fatty acids of strain PL-41(T) were summed feature 8 (comprising C18 : 1ω7c and C18 : 1ω6c), C16 : 0 and C19 : 0 cyclo ω8c. Polar lipids of strain PL-41(T) include two unidentified aminophospholipids (APL1, 2), two unidentified phospholipids (PL1, 2), phosphatidylcholine and three unidentified lipids (L1-3). Strain PL-41(T) showed 16S rRNA gene sequence similarity of 97.0-97.5 % to the type strains of recognized species of the genus Rhizobium. Phylogenetic analysis of strain PL-41(T) based on the sequences of housekeeping genes recA and atpD confirmed (similarities are less than 90 %) its position as a distinct species of the genus Rhizobium. The DNA G+C content was 57.8 mol%. DNA-DNA relatedness between strain PL-41(T) and the type strains of Rhizobium huautlense S02(T), Rhizobium alkalisoli CCBAU 01393(T), Rhizobium vignae CCBAU 05176(T) and Rhizobium loessense CCBAU 7190B(T) were 33.4, 22.6, 25.5 and 45.1 %, respectively, indicating that strain PL-41(T) was distinct from them genetically. Strain PL-41(T) also can be differentiated from these four phylogenetically related species of the genus Rhizobium by various phenotypic properties. On the basis of phenotypic properties, phylogenetic distinctiveness and genetic data, strain PL-41(T) is considered to represent a novel species of the genus Rhizobium, for which the name Rhizobium tarimense sp. nov. is proposed. The type strain is PL-41(T) ( = CCTCC AB 2011011(T) = NRRL B-59556(T)).</AbstractText>
</Abstract>
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<Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
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<MeshHeading>
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